PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G222500.1.p
Common NamePRUPE_ppa025306mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 441aa    MW: 48912.8 Da    PI: 6.9301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G222500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021293334955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR+++ ++   L +llP +     +K++ a++ e+A +Y+k Lq
  Prupe.3G222500.1.p 293 ARGRRQKLSDKTRCLEKLLPLD-----RKMDTATVFEEAYKYVKFLQ 334
                         599******************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-8288343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-4292337No hitNo description
Gene3DG3DSA:4.10.280.102.3E-7293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEDSELVMLM RSLLAKAQEE INTTNTWEAE AEEVPTFTAM LSSAGVSLHS FLSTTAAHDD  60
PLDPKAMSSS SSLMPLPFSE FAQDTLITTT PTHSPTTTFN FTTAAEADYI QTQMQSPILR  120
LPKHEPISNY QDYFPIPSPS NTNVCSSPSF HHLPQQQYQF YNNPPDLNLE FTMHSASSAT  180
STPIHHHSPY DSMNDCSSIF HHLPDLLPLD PFNSPYSSSS YKRARLFDPP HFQNLHLSTP  240
LPLFPPNNNT HNALLPSSSS SPYKIPAKPR TRKRGTPSPS PSPSPSPHAS SLARGRRQKL  300
SDKTRCLEKL LPLDRKMDTA TVFEEAYKYV KFLQAQVTAL QAMPVVTPNT SSASATGFDD  360
DNLSPMSSRT TGGLERLSRN QLLQVLLNSP VAQTVMYSQG CCVFSVEQLA KFNCSRSSRS  420
LNLLRHYYPH LFFDSHSPTN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8624627e-88AY862462.1 Prunus dulcis clone CPDCT025 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216742.10.0hypothetical protein PRUPE_ppa025306mg, partial
TrEMBLM5WXI50.0M5WXI5_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.14e-25bHLH family protein